Comparative transcriptome analysis reveals defense-related genes and pathways against downy mildew in Vitis amurensis grapevine.
Identifieur interne : 000466 ( Main/Exploration ); précédent : 000465; suivant : 000467Comparative transcriptome analysis reveals defense-related genes and pathways against downy mildew in Vitis amurensis grapevine.
Auteurs : Xinlong Li [République populaire de Chine] ; Jiao Wu [République populaire de Chine] ; Ling Yin [République populaire de Chine] ; Yali Zhang [République populaire de Chine] ; Junjie Qu [République populaire de Chine] ; Jiang Lu [République populaire de Chine]Source :
- Plant physiology and biochemistry : PPB [ 1873-2690 ] ; 2015.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Vitis.
- microbiologie : Maladies des plantes.
- métabolisme : Vitis.
- physiologie : Gènes de plante, Régulation de l'expression des gènes végétaux, Résistance à la maladie, Transcriptome.
- Oomycetes.
English descriptors
- KwdEn :
- MESH :
- genetics : Vitis.
- metabolism : Vitis.
- microbiology : Plant Diseases.
- physiology : Disease Resistance, Gene Expression Regulation, Plant, Genes, Plant, Transcriptome.
- Oomycetes.
Abstract
Downy mildew (DM), caused by oomycete Plasmopara viticola (Pv), can lead to severe damage to Vitis vinifera grapevines. Vitis amurensis has generally been regarded as a DM resistant species. However, when V. amurensis 'Shuanghong' were inoculated with Pv strains 'ZJ-1-1' and 'JL-7-2', the former led to obvious DM symptoms (compatible), while the latter did not develop any DM symptoms but exhibited necrosis (incompatible). In order to underlie molecular mechanism in DM resistance, mRNA-seq based expression profiling of 'Shuanghong' was compared at 12, 24, 48 and 72 h post inoculation (hpi) with these two strains. Specific genes and their corresponding pathways responsible for incompatible interaction were extracted by comparing with compatible interaction. In the incompatible interaction, 37 resistance (R) genes were more expressed at the early stage of infection (12 hpi). Similarly, genes involved in defense signaling, including MAPK. ROS/NO, SA, JA, ET and ABA pathways, and genes associated with defense-related metabolites synthesis, such as pathogenesis-related genes and phenylpropanoids/stilbenoids/flavonoids biosynthesizing genes, were also activated mainly during the early stages of infection. On the other hand, Ca(2+) signaling and primary metabolism, such as photosynthesis and fatty acid synthesis, were more repressed after 'JL-7-2' challenge. Further quantification of some key defense-related factors, including phytohormones, phytoalexins and ROS, generally showed much more accumulation during the incompatible interaction, indicating their important roles in DM defense. In addition, a total of 43 and 52 RxLR effectors were detected during 'JL-7-2' and 'ZJ-1-1' infection processes, respectively.
DOI: 10.1016/j.plaphy.2015.06.016
PubMed: 26151858
Affiliations:
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Electronic address: j.lu.cau@gmail.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Plant physiology and biochemistry : PPB</title><idno type="eISSN">1873-2690</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Disease Resistance (physiology)</term><term>Gene Expression Regulation, Plant (physiology)</term><term>Genes, Plant (physiology)</term><term>Oomycetes (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Transcriptome (physiology)</term><term>Vitis (genetics)</term><term>Vitis (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Gènes de plante (physiologie)</term><term>Maladies des plantes (microbiologie)</term><term>Oomycetes (MeSH)</term><term>Régulation de l'expression des gènes végétaux (physiologie)</term><term>Résistance à la maladie (physiologie)</term><term>Transcriptome (physiologie)</term><term>Vitis (génétique)</term><term>Vitis (métabolisme)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Gènes de plante</term><term>Régulation de l'expression des gènes végétaux</term><term>Résistance à la maladie</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Disease Resistance</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Oomycetes</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Oomycetes</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Downy mildew (DM), caused by oomycete Plasmopara viticola (Pv), can lead to severe damage to Vitis vinifera grapevines. Vitis amurensis has generally been regarded as a DM resistant species. However, when V. amurensis 'Shuanghong' were inoculated with Pv strains 'ZJ-1-1' and 'JL-7-2', the former led to obvious DM symptoms (compatible), while the latter did not develop any DM symptoms but exhibited necrosis (incompatible). In order to underlie molecular mechanism in DM resistance, mRNA-seq based expression profiling of 'Shuanghong' was compared at 12, 24, 48 and 72 h post inoculation (hpi) with these two strains. Specific genes and their corresponding pathways responsible for incompatible interaction were extracted by comparing with compatible interaction. In the incompatible interaction, 37 resistance (R) genes were more expressed at the early stage of infection (12 hpi). Similarly, genes involved in defense signaling, including MAPK. ROS/NO, SA, JA, ET and ABA pathways, and genes associated with defense-related metabolites synthesis, such as pathogenesis-related genes and phenylpropanoids/stilbenoids/flavonoids biosynthesizing genes, were also activated mainly during the early stages of infection. On the other hand, Ca(2+) signaling and primary metabolism, such as photosynthesis and fatty acid synthesis, were more repressed after 'JL-7-2' challenge. Further quantification of some key defense-related factors, including phytohormones, phytoalexins and ROS, generally showed much more accumulation during the incompatible interaction, indicating their important roles in DM defense. In addition, a total of 43 and 52 RxLR effectors were detected during 'JL-7-2' and 'ZJ-1-1' infection processes, respectively. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26151858</PMID><DateCompleted><Year>2016</Year><Month>05</Month><Day>18</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-2690</ISSN><JournalIssue CitedMedium="Internet"><Volume>95</Volume><PubDate><Year>2015</Year><Month>Oct</Month></PubDate></JournalIssue><Title>Plant physiology and biochemistry : PPB</Title><ISOAbbreviation>Plant Physiol Biochem</ISOAbbreviation></Journal><ArticleTitle>Comparative transcriptome analysis reveals defense-related genes and pathways against downy mildew in Vitis amurensis grapevine.</ArticleTitle><Pagination><MedlinePgn>1-14</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.plaphy.2015.06.016</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S0981-9428(15)30045-0</ELocationID><Abstract><AbstractText>Downy mildew (DM), caused by oomycete Plasmopara viticola (Pv), can lead to severe damage to Vitis vinifera grapevines. Vitis amurensis has generally been regarded as a DM resistant species. However, when V. amurensis 'Shuanghong' were inoculated with Pv strains 'ZJ-1-1' and 'JL-7-2', the former led to obvious DM symptoms (compatible), while the latter did not develop any DM symptoms but exhibited necrosis (incompatible). In order to underlie molecular mechanism in DM resistance, mRNA-seq based expression profiling of 'Shuanghong' was compared at 12, 24, 48 and 72 h post inoculation (hpi) with these two strains. Specific genes and their corresponding pathways responsible for incompatible interaction were extracted by comparing with compatible interaction. In the incompatible interaction, 37 resistance (R) genes were more expressed at the early stage of infection (12 hpi). Similarly, genes involved in defense signaling, including MAPK. ROS/NO, SA, JA, ET and ABA pathways, and genes associated with defense-related metabolites synthesis, such as pathogenesis-related genes and phenylpropanoids/stilbenoids/flavonoids biosynthesizing genes, were also activated mainly during the early stages of infection. On the other hand, Ca(2+) signaling and primary metabolism, such as photosynthesis and fatty acid synthesis, were more repressed after 'JL-7-2' challenge. Further quantification of some key defense-related factors, including phytohormones, phytoalexins and ROS, generally showed much more accumulation during the incompatible interaction, indicating their important roles in DM defense. In addition, a total of 43 and 52 RxLR effectors were detected during 'JL-7-2' and 'ZJ-1-1' infection processes, respectively. </AbstractText><CopyrightInformation>Copyright © 2015 Elsevier Masson SAS. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Xinlong</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>The Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Jiao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>The Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yin</LastName><ForeName>Ling</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>The Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Yali</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qu</LastName><ForeName>Junjie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Guangxi Crop Genetic Improvement and Biotechnology Key Lab, Guangxi Academy of Agricultural Science, Guangxi, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Jiang</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>The Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, China. Electronic address: j.lu.cau@gmail.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>06</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>France</Country><MedlineTA>Plant Physiol Biochem</MedlineTA><NlmUniqueID>9882449</NlmUniqueID><ISSNLinking>0981-9428</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="Y">Oomycetes</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Comparative transcriptome</Keyword><Keyword MajorTopicYN="N">Downy mildew</Keyword><Keyword MajorTopicYN="N">Interaction</Keyword><Keyword MajorTopicYN="N">Resistance mechanism</Keyword><Keyword MajorTopicYN="N">Vitis amurensis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>03</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2015</Year><Month>06</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>06</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>7</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>7</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>5</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26151858</ArticleId><ArticleId IdType="pii">S0981-9428(15)30045-0</ArticleId><ArticleId IdType="doi">10.1016/j.plaphy.2015.06.016</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Xinlong" sort="Li, Xinlong" uniqKey="Li X" first="Xinlong" last="Li">Xinlong Li</name></noRegion><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name><name sortKey="Qu, Junjie" sort="Qu, Junjie" uniqKey="Qu J" first="Junjie" last="Qu">Junjie Qu</name><name sortKey="Wu, Jiao" sort="Wu, Jiao" uniqKey="Wu J" first="Jiao" last="Wu">Jiao Wu</name><name sortKey="Yin, Ling" sort="Yin, Ling" uniqKey="Yin L" first="Ling" last="Yin">Ling Yin</name><name sortKey="Zhang, Yali" sort="Zhang, Yali" uniqKey="Zhang Y" first="Yali" last="Zhang">Yali Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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